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1

Structural Basis of Drug Resistance by Genetic Variants of HIV Type 1 Clade C Protease from India

Kandathil, Abraham Joseph, Joseph, Agnel Praveen, Kannangai, Rajesh, Srinivasan, Narayanaswamy, Abraham, Oriapadickal Cherian, Pulimood, Susanne Alexander, Sridharan, Gopalan

Journal:

AIDS Research and Human Retroviruses

Year:

2009

Language:

english

File:

PDF, 112.24 MB

english, 2009

2

A structural model for microtubule minus-end recognition and protection by CAMSAP proteins

Atherton, Joseph, Jiang, Kai, Stangier, Marcel M, Luo, Yanzhang, Hua, Shasha, Houben, Klaartje, van Hooff, Jolien J E, Joseph, Agnel-Praveen, Scarabelli, Guido, Grant, Barry J, Roberts, Anthony J, Top

Journal:

Nature Structural and Molecular Biology

Year:

2017

Language:

english

File:

PDF, 6.51 MB

english, 2017

3

Author Correction: A structural model for microtubule minus-end recognition and protection by CAMSAP proteins

Atherton, Joseph, Jiang, Kai, Stangier, Marcel M., Luo, Yanzhang, Hua, Shasha, Houben, Klaartje, van Hooff, Jolien J. E., Joseph, Agnel-Praveen, Scarabelli, Guido, Grant, Barry J., Roberts, Anthony J.

Journal:

Nature Structural and Molecular Biology

Year:

2020

File:

PDF, 686 KB

2020

4

Species specific amino acid sequence–protein local structure relationships: An analysis in the light of a structural alphabet

Alexandre G. de Brevern, Agnel Praveen Joseph

Journal:

Journal of Theoretical Biology

Year:

2011

Language:

english

File:

PDF, 1003 KB

english, 2011

5

A short survey on protein blocks

Agnel Praveen Joseph, Garima Agarwal, Swapnil Mahajan, Jean-Christophe Gelly, Lakshmipuram S. Swapna, Bernard Offmann, Frédéric Cadet, Aurélie Bornot, Manoj Tyagi, Hélène Valadié, Bohdan Schneider, Ca

Journal:

Biophysical Reviews

Year:

2010

Language:

english

File:

PDF, 690 KB

english, 2010

6

Improvement of protein structure comparison using a structural alphabet

Agnel Praveen Joseph, N. Srinivasan, Alexandre G. de Brevern

Journal:

Year:

2011

Language:

english

File:

PDF, 1.23 MB

english, 2011

7

Progressive structure-based alignment of homologous proteins: Adopting sequence comparison strategies

Joseph, Agnel Praveen, Srinivasan, Narayanaswamy, de Brevern, Alexandre G.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

8

Bioinformatic Analysis of the Protein/DNA Interface

Schneider, Bohdan, Černý, Jiří, Svozil, Daniel, Joseph, Agnel Praveen, Gelly, Jean-Christophe, de Brevern, Alexandre G.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

9

mulPBA: an efficient multiple protein structure alignment method based on a structural alphabet

Léonard, Sylvain, Joseph, Agnel Praveen, Srinivasan, Narayanaswamy, Gelly, Jean-Christophe, de Brevern, Alexandre G.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2014

Language:

english

File:

PDF, 420 KB

english, 2014

10

Cis–trans isomerization of omega dihedrals in proteins

Pierrick Craveur, Agnel Praveen Joseph, Pierre Poulain…

Journal:

Year:

2013

Language:

english

File:

PDF, 640 KB

english, 2013

11

Cis–transpeptide variations in structurally similar proteins

Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern

Journal:

Year:

2012

Language:

english

File:

PDF, 1.19 MB

english, 2012

12

β-bulges: Extensive structural analyses of β-sheets irregularities

Craveur, Pierrick, Joseph, Agnel Praveen, Rebehmed, Joseph, de Brevern, Alexandre G.

Journal:

Protein Science

Year:

2013

Language:

english

File:

PDF, 799 KB

english, 2013

13

Efficient Protein Structure Alignment Methods Based on a Structural Alphabet

Joseph, Agnel Praveen, Gelly, Jean-Christophe, Leonard, Sylvain, Craveur, Pierrick, Esque, Jeremy, Faure, Guilhem, Rebehmed, Joseph, Etchebest, Catherine, Srinivasan, Narayanaswamy, de Brevern, Alexan

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 140 KB

english, 2014

14

Re-analysis of cryoEM data on HCV IRES bound to 40S subunit of human ribosome integrated with recent structural information suggests new contact regions between ribosomal proteins and HCV RNA

Joseph, Agnel Praveen, Bhat, Prasanna, Das, Saumitra, Srinivasan, Narayanaswamy

Journal:

Year:

2014

Language:

english

File:

PDF, 1.98 MB

english, 2014

15

Identification of Specific DNA Binding Residues in the TCP Family of Transcription Factors inArabidopsis

Pooja Aggarwal, Mainak Das Gupta, Agnel Praveen Joseph, Nirmalya Chatterjee, N. Srinivasan and Utpal Nath

Journal:

Year:

2010

Language:

english

File:

PDF, 3.60 MB

english, 2010

16

Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment

Joseph, Agnel Praveen, Malhotra, Sony, Burnley, Tom, Wood, Chris, Clare, Daniel K., Winn, Martyn, Topf, Maya

Journal:

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

17

Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps

Rakesh, Ramachandran, Joseph, Agnel Praveen, Bhaskara, Ramachandra M., Srinivasan, Narayanaswamy

Journal:

Year:

2016

Language:

english

File:

PDF, 2.68 MB

english, 2016

18

Unravelling the Mechanism of Membrane Attack Complex Pore Closure

Boyd, Courtney, Serna, Marina, Gardner, Scott, Praveen-Joseph, Agnel, Topf, Maya, Morgan, B. Paul, Bubeck, Doryen

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 47 KB

english, 2017

19

Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy

Joseph, Agnel Praveen, Lagerstedt, Ingvar, Patwardhan, Ardan, Topf, Maya, Winn, Martyn

Journal:

Journal of Structural Biology

Year:

2017

Language:

english

File:

PDF, 3.68 MB

english, 2017

20

Integrative modelling of cellular assemblies

Joseph, Agnel Praveen, Polles, Guido, Alber, Frank, Topf, Maya

Journal:

Current Opinion in Structural Biology

Year:

2017

Language:

english

File:

PDF, 873 KB

english, 2017

21

Structural basis of human kinesin-8 function and inhibition

Locke, Julia, Joseph, Agnel Praveen, Peña, Alejandro, Möckel, Martin M., Mayer, Thomas U., Topf, Maya, Moores, Carolyn A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.89 MB

english, 2017

22

Assignment of PolyProline II Conformation and Analysis of Sequence – Structure Relationship

Mansiaux, Yohann, Joseph, Agnel Praveen, Gelly, Jean-Christophe, de Brevern, Alexandre G., Buehler, Markus

Journal:

Year:

2011

Language:

english

File:

PDF, 1.93 MB

english, 2011

23

Local Structural Differences in Homologous Proteins: Specificities in Different SCOP Classes

Joseph, Agnel Praveen, Valadié, Hélène, Srinivasan, Narayanaswamy, de Brevern, Alexandre G., Fraternali, Franca

Journal:

Year:

2012

Language:

english

File:

PDF, 5.25 MB

english, 2012

24

CryoEM reveals how the complement membrane attack complex ruptures lipid bilayers

Menny, Anaïs, Serna, Marina, Boyd, Courtney M., Gardner, Scott, Joseph, Agnel Praveen, Morgan, B. Paul, Topf, Maya, Brooks, Nicholas J., Bubeck, Doryen

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 3.42 MB

english, 2018

25

Cryo‐electron microscopy targets in CASP13: Overview and evaluation of results

Kryshtafovych, Andriy, Malhotra, Sony, Monastyrskyy, Bohdan, Cragnolini, Tristan, Joseph, Agnel‐Praveen, Chiu, Wah, Topf, Maya

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

File:

PDF, 4.98 MB

2019

26

Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps

Joseph, Agnel Praveen, Lagerstedt, Ingvar, Jakobi, Arjen, Burnley, Tom, Patwardhan, Ardan, Topf, Maya, Winn, Martyn

Journal:

Journal of Chemical Information and Modeling

Year:

2020

File:

PDF, 7.05 MB

2020

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